By train
Railroads in Honduras have been built in the northern lowlands (Valle de Sula) since 1880s by two competing banana growers. They never extended to the capital Tegucigalpa or to the Pacific coast and never linked to other countries.
In 2006, three separate segments operated under the management of FNH - Ferrocarril Nacional de Honduras:
San Pedro Sula - Puerto Cortes (50 km, freight trains carrying mainly lumber) and occasional passenger trains around San Pedro Sula, for example during carneval and other holidays.
City rail in La Ceiba (3 km, passenger transport between downtown and a western suburb, Col. Sitramacsa)
Line between La Unión and Parque Nacional Cuero y Salado (9 km, transport of coconuts to a processing plant and of tourists to national park).

By boat
There is regular boat service from La Ceiba to the bay islands of Roatan and Utila.
Service to Roatan is on the Galaxy Wave II. The ferry trip costs less than flying, and leaves (mostly) on time. A round-trip prima class ticket costs $53; round-trip general class, $43. Both prima and general seating areas are comfortable and offer air conditioning and flat-screen TVs for your entertainment. The crossing takes about 80 minutes each way.
Service to Utila is on the Utila Princess. Tickets cost about $30 round trip and the crossing takes about 60 minutes.
Both ferries leave from the same dock. You should arrive at the dock in La Ceiba about an hour early to buy tickets and check luggage. **If traveling to the bay islands during Semana Santa (Easter week) it is highly recommended to fly, as the wait for a ferry can be up to 8 hours. If you are a Senior citizen you will find the rate very attractive. If you are prone to sea sickness, the trip North to Roatan can be very uncomfortable, as the Galaxy is fighting the currents. Windy days, re-consider. Otherwise it is a delightful trip, Utila to the West and the Cayos to the East. Last trip of the day to Roatan is awesome with a fanastic sunset.
Galaxy II schedule: Roatan - La Ceiba 7AM.; La Ceiba - Roatan 10AM. Roatan - La Ceiba 1 PM, La Ceiba - Roatan 4PM.
New Princess schedule: Utila - La Ceiba 6:20AM, La Ceiba - Utila 9:30AM, Utila - La Ceiba 2PM, La Ceiba - Utila 4PM.

By thumb
Hitchhiking is common in rural areas, even for single women, when there is no proper bus connection. By asking around you will be pointed to the various departure points. Expect to pay the equivalent bus fare at the conclusion of your journey.